YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NK1R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNVLPMDSD LFPNISTNTS ESNQFVQPTW QIVLWAAAYT VIVVTSVVGN VVVIWIILAH  60
   61 KRMRTVTNYF LVNLAFAEAC MAAFNTVVNF TYAVHNVWYY GLFYCKFHNF FPIAALFASI 120
  121 YSMTAVAFDR YMAIIHPLQP RLSATATKVV IFVIWVLALL LAFPQGYYST TETMPSRVVC 180
  181 MIEWPEHPNR TYEKAYHICV TVLIYFLPLL VIGYAYTVVG ITLWASEIPG DSSDRYHEQV 240
  241 SAKRKVVKMM IVVVCTFAIC WLPFHVFFLL PYINPDLYLK KFIQQVYLAS MWLAMSSTMY 300
  301 NPIIYCCLND RFRLGFKHAF RCCPFISAGD YEGLEMKSTR YLQTQSSVYK VSRLETTIST 360
  361 VVGAHEEEPE EGPKATPSSL DLTSNGSSRS NSKTMTESSS FYSNMLA

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.97
Transmembrane Helix	35	58	0.94
Cytoplasmic	59	68	0.86
Transmembrane Helix	69	90	0.91
Non-Cytoplasmic	91	109	0.82
Transmembrane Helix	110	128	0.94
Cytoplasmic	129	143	0.83
Transmembrane Helix	144	166	0.86
Non-Cytoplasmic	167	203	0.91
Transmembrane Helix	204	225	0.90
Cytoplasmic	226	245	0.96
Transmembrane Helix	246	269	0.89
Non-Cytoplasmic	270	287	0.88
Transmembrane Helix	288	308	0.89
Cytoplasmic	309	407	0.95