YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14718596
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	117	0.98
Transmembrane Helix	118	140	0.89
Non-Cytoplasmic	141	156	0.94
Transmembrane Helix	157	178	0.90
Cytoplasmic	179	187	0.82
Transmembrane Helix	188	208	0.87
Non-Cytoplasmic	209	261	0.87
Transmembrane Helix	262	281	0.94
Cytoplasmic	282	334	0.93
Transmembrane Helix	335	357	0.81
Non-Cytoplasmic	358	373	0.88
Transmembrane Helix	374	396	0.92
Cytoplasmic	397	533	0.97
Transmembrane Helix	534	551	0.96
Non-Cytoplasmic	552	600	0.64
Transmembrane Helix	601	616	0.34
Cytoplasmic	617	660	0.68
Transmembrane Helix	661	683	0.87
Non-Cytoplasmic	684	733	0.82
Transmembrane Helix	734	755	0.84
Cytoplasmic	756	896	0.91
Transmembrane Helix	897	916	0.87
Non-Cytoplasmic	917	934	0.69
Transmembrane Helix	935	956	0.70
Cytoplasmic	957	965	0.53
Transmembrane Helix	966	988	0.79
Non-Cytoplasmic	989	1020	0.56
Transmembrane Helix	1021	1048	0.69
Cytoplasmic	1049	1094	0.59
Transmembrane Helix	1095	1118	0.70
Non-Cytoplasmic	1119	1138	0.49
Transmembrane Helix	1139	1165	0.83
Cytoplasmic	1166	1215	0.48
Transmembrane Helix	1216	1238	0.79
Non-Cytoplasmic	1239	1247	0.44
Transmembrane Helix	1248	1270	0.74
Cytoplasmic	1271	1342	0.47
Transmembrane Helix	1343	1364	0.89
Non-Cytoplasmic	1365	1435	0.53
Transmembrane Helix	1436	1460	0.86
Cytoplasmic	1461	1643	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHQRQQQED HANEANYARG TRLPISGEGP TSQPNSSKQT VLSWQAAIDA ARQAKAAQTM  60
   61 STSAPPPVGS LSQRKRQQYA KSKKQGNSSN SRPARALFCL SLNNPIRRAC ISIVDWKPFD 120
  121 IFILLAIFAN CVALAIYIPF PEDDSNSTNH NLEKVEYAFL IIFTVETFLK IIAYGLLLHP 180
  181 NAYVRNGWNL LDFVIVIVGL FSVILEQLTK ETEGGNHSSG KSGGFDVKAL RAFRVLRPLR 240
  241 LVSSVPSLQV VLNSIIKAMV PLLHIALLVL FVIIIYAIIG LELFIGKMHK TCFFADSDIV 300
  301 AEEDPAPCAF SGNGRQCAAN GTECRSGWVG PNGGITNFDN FAFAMLTVFQ CITMEGWTDV 360
  361 LYWVNDAIGW EWPWVYFVSL IILGSFFVLN LVLGVLSGEF SKEREKAKAR GDFQKLREKQ 420
  421 QLEEDLKGYL DWITQAEDID PENEEEGGEE GKRNTSMPTS ETESVNTENV SGEGETQGCC 480
  481 GSLWCWWKRR GAAKTGPSGC RRWGQAISKS KLSRRWRRWN RFNRRRCRAA VKSVTFYWLV 540
  541 IVLVFLNTLT ISSEHYNQPD WLTQIQDIAN KVLLALFTCE MLVKMYSLGL QAYFVSLFNR 600
  601 FDCFVVCGGI TETILVELEL MSPLGVSVFR CVRLLRIFKV TRHWTSLSNL VASLLNSMKS 660
  661 IASLLLLLFL FIIIFSLLGM QLFGGKFNFD ETQTKRSTFD NFPQALLTVF QILTGEDWNA 720
  721 VMYDGIMAYG GPSSSGMIVC IYFIILFICG NYILLNVFLA IAVDNLADAE SLNTAQKEEA 780
  781 EEKERKKIAR KESLENKKNN KPEVNQIANS DNKVTIDDYQ EEAEDKDPYP PCDVPVGEEE 840
  841 EEEEEDEPEV PAGPRPRRIS ELNMKEKIAP IPEGSAFFIL SKTNPIRVGC HKLINHHIFT 900
  901 NLILVFIMLS SAALAAEDPI RSHSFRNTIL GYFDYAFTAI FTVEILLKMT TFGAFLHKGA 960
  961 FCRNYFNLLD MLVVGVSLVS FGIQSSAISV VKILRVLRVL RPLRAINRAK GLKHVVQCVF1020
 1021 VAIRTIGNIM IVTTLLQFMF ACIGVQLFKG KFYRCTDEAK SNPEECRGLF ILYKDGDVDS1080
 1081 PVVRERIWQN SDFNFDNVLS AMMVLFTVST FEGWPALLYK AIDSNGENVG PVYNYRVEIS1140
 1141 IFFIIYIIIV AFFMMNIFVG FVIVTFQEQG EKEYKNCELD KNQRQCVEYA LKARPLRRYI1200
 1201 PKNPYQYKFW YVVNSSPFEY MMFVLIMLNT LCLAMQHYEQ SKMFNDAMDI LNMVFTGVFT1260
 1261 VEMVLKVIAF KPKHYFTDAW NTFDALIVVG SVVDIAITEV NNSEESNRIS ITFFRLFRVM1320
 1321 RLVKLLSRGE GIRTLLWTFI KSFQALPYVA LLIAMLFFIY AVIGMQMFGK VAMRDNNQIN1380
 1381 RNNNFQTFPQ AVLLLFRCAT GEAWQEIMLA CLPGKLCDPD SDYNPGEEYT CGSNFAIVYF1440
 1441 ISFYMLCAFL IINLFVAVIM DNFDYLTRDW SILGPHHLDE FKRIWSEYDP EAKGRIKHLD1500
 1501 VVTLLRRIQP PLGFGKLCPH RVACKRLVAM NMPLNSDGTV MFNATLFALV RTALKIKTEG1560
 1561 NLEQANEELR AVIKKIWKKT SMKLLDQVVP PAGDDEVTVG KFYATFLIQD YFRKFKKRKE1620
 1621 QGLVGKYPAK NTTIALQMLE RML