YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27676670, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCRKCQLCL SALLTLLGLK VYIEWTSESW LKKAEPRGAL PSPTPPSAEP TLPTNLSARL  60
   61 GQTGPLSSAY WNQQQRQLGV LPSSDCQTWG SVAASEILDF ILYPQDLRRF LLSAACRSFP 120
  121 LWLPAGEGSP VASCSDKDVP YLLLAVKSEP GHFAARQAVR ETWGSPVAGT RLLFLLGSPL 180
  181 GMGGPDLTSL VTWESRRYGD LLLWDFLDVP YNRTLKDLLL LTWLSHHCPK VSFVLQVQDN 240
  241 AFVHIPALLE HLQALPPTWA RSLYLGEVFT QAKPLRKPGG PFYVPKTFFE GDYPAYASGG 300
  301 GYVISGRLAP WLLQAAARVA PFPFDDVYTG FCFRALGLAP RAHPGFLTAW PAERTRDPCA 360
  361 VRGLLLVHPV SPQDTIWLWR HLWVPELRC

Type	Start	End	Confidence
Signal Peptide	1	23	0.90
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	389	0.99