YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S28A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.99
Transmembrane Helix	81	103	0.91
Non-Cytoplasmic	104	108	0.86
Transmembrane Helix	109	129	0.95
Cytoplasmic	130	149	0.95
Transmembrane Helix	150	170	0.95
Non-Cytoplasmic	171	177	0.87
Transmembrane Helix	178	196	0.94
Cytoplasmic	197	205	0.77
Transmembrane Helix	206	224	0.89
Non-Cytoplasmic	225	260	0.74
Transmembrane Helix	261	285	0.85
Cytoplasmic	286	337	0.52
Transmembrane Helix	338	358	0.81
Non-Cytoplasmic	359	364	0.53
Transmembrane Helix	365	386	0.78
Cytoplasmic	387	423	0.85
Transmembrane Helix	424	449	0.81
Non-Cytoplasmic	450	457	0.71
Transmembrane Helix	458	479	0.46
Cytoplasmic	480	531	0.55
Transmembrane Helix	532	555	0.88
Non-Cytoplasmic	556	567	0.53
Transmembrane Helix	568	592	0.80
Cytoplasmic	593	648	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNTQRQRE SISLTPMAHG LENMGAEFLE SMEEGRLPHS HSSLPEGEGG LNKAERKAFS  60
   61 RWRSLQPTVQ ARSFCREHRQ LFGWICKGLL STACLGFLMV ACLLDLQRAL ALLIITCVVL 120
  121 VFLAYDLLKR LLGSKLRRCV KFQGHSCLSL WLKRGLALAA GVGLILWLSL DTAQRPEQLV 180
  181 SFAGICVFLV LLFAGSKHHR AVSWRAVSWG LGLQFVLGLF VIRTEPGFIA FQWLGDQIQV 240
  241 FLSYTEAGSS FVFGEALVKD VFAFQVLPII IFFSCVMSVL YYLGLMQWVI LKIAWLMQVT 300
  301 MGTSATETLS VAGNIFVSQT EAPLLIRPYL ADMTLSEVHV VMTGGYATIA GSLLGAYISF 360
  361 GIDAASLIAA SVMAAPCALA LSKLVYPEVE ESKFRSENGV KLTYGDAQNL LEAASAGAAI 420
  421 SVKVVANIAA NLIAFLAVLA FVNAALSWLG DMVDIQGLSF QLICSYVLRP VAFLMGVAWE 480
  481 DCPVVAELLG IKFFLNEFVA YQELSQYKQR RLAGAEEWLG DKKQWISVRA EILTTYALCG 540
  541 FANFSSIGIM LGGLTSLVPQ RRSDFSQIVL RALITGAFVS LLNACVAGIL YVPRGVEVDC 600
  601 VSLLNQTVSS SSFEVYLCCR QVFQSTSSEF SQVALDNCCR FYNHTVCT