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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|475550, gi|31...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.77
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALVSLQDP PVDMGGALGP ALLLTSLLGA WARLGAGQGE QAVTVAVVFG SSGPLQTQAR  60
   61 TRLTSQNFLD LPLEIQPLTV GVNNTNPSSI LTQICGLLGA ARVHGIVFED NVDTEAVAQL 120
  121 LDFVSSQTHV PILSISGGSA VVLTPKEPGS AFLQLGVSLE QQLQVLFKVL EEYDWSAFAV 180
  181 ITSLHPGHAL FLEGVRAVAD ASYLSWRLLD VLTLELGPGG PRARTQRLLR QVDAPVLVAY 240
  241 CSREEAEVLF AEAAQAGLVG PGHVWLVPNL ALGSTDAPPA AFPVGLISVV TESWRLSLRQ 300
  301 KVRDGVAILA LGAHSYRRQY GTLPAPAGDC RRHPGPVSPA REAFYRHLLN VTWEGRDFSF 360
  361 SPGGYLVRPT MVVIALNRHR LWEMVGRWDH GVLYMKYPVW PRYSTSLQPV VDSRHLTVAT 420
  421 LEERPFVIVE SPDPGTGGCV PNTVPCRRQS NHTFSSGDLT PYTKLCCKGF CIDILKKLAK 480
  481 VVKFSYDLYL VTNGKHGKRV RGVWNGMIGE VYYKRADMAI GSLTINEERS EIIDFSVPFV 540
  541 ETGISVMVSR SNGTVSPSAF LEPYSPAVWV MMFVMCLTVV AITVFMFEYF SPVSYNQNLT 600
  601 KGKKPGGPSF TIGKSVWLLW ALVFINSVPI ENPRGTTSKI MVLVWAFFAV IFLASYTANL 660
  661 AAFMIQEQYI DTVSGLSDKK FQRPQDQYPP FRFGTVPNGS TERNIRSNYR DMHTHMVKFN 720
  721 QRSVEDALTS LKMGKLDAFI YDAAVLNYMA GKDEGCKLVT IGSGKVFATT GYGIAMQKDS 780
  781 HWKRAIDLAL LQLLGDGETQ KLETVWLSGI CQNEKNEVMS SKLDIDNMAG VFYMLLVAMG 840
  841 LALLVFAWEH LVYWKLRHSV PNSSQLDFLL AFSRGIYSCF NGVQSLPSPA RPPSPDLTAD 900
  901 SAQANVLKML QAARDMVNTA DVSSSLDRAT RTIENWGNNR RVPAPTASGP RSSTPGPPGQ 960
  961 PSPSGWGPPG GGRTPLARRA PQPPARPATC GPPLPDVSRP SCRHASDARW PVRVGHQGPH1020
 1021 VSASERRALP ERSLLPAHCH YSSFPRAERS GRPYLPLFPE PPEPDDLALL GPEQLARREA1080
 1081 MLRAAWARGP RPRHASLPSS VAEAFTRSNP LPARCTGHAC ACPCPQSRPS CRHLAQAQSL1140
 1141 RLPSYPEACV EGVPAGVATW QPRQHVCLHA HTRLPFCWGT VCRHPPPCTS HSPWLIGTWE1200
 1201 PPAHRVRTLG LGTGYRDSGV LEEVSRETCG TQGFPRSCTW RRVSSLESEV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle