YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GRPR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPNNCSHLN LEVDPFLSCN NTFNQTLSPP KMDNWFHPGI IYVIPAVYGL IIVIGLIGNI  60
   61 TLIKIFCTVK SMRNVPNLFI SSLALGDLLL LVTCAPVDAS KYLADRWLFG RIGCKLIPFI 120
  121 QLTSVGVSVF TLTALSADRY KAIVRPMDIQ ASHALMKICL KAALIWIVSM LLAIPEAVFS 180
  181 DLHPFHVKDT NQTFISCAPY PHSNELHPKI HSMASFLVFY IIPLSIISVY YYFIARNLIQ 240
  241 SAYNLPVEGN IHVKKQIESR KRLAKTVLVF VGLFAFCWLP NHVIYLYRSY HYSEVDTSML 300
  301 HFITSICARL LAFTNSCVNP FALYLLSKSF RKQFNTQLLC CQPSLLNRSH STGRSTTCMT 360
  361 SFKSTNPSAT FSLINGNICH EGYV

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.97
Transmembrane Helix	40	63	0.88
Cytoplasmic	64	76	0.80
Transmembrane Helix	77	97	0.91
Non-Cytoplasmic	98	116	0.86
Transmembrane Helix	117	137	0.94
Cytoplasmic	138	157	0.90
Transmembrane Helix	158	177	0.93
Non-Cytoplasmic	178	212	0.93
Transmembrane Helix	213	234	0.92
Cytoplasmic	235	262	0.98
Transmembrane Helix	263	285	0.88
Non-Cytoplasmic	286	301	0.88
Transmembrane Helix	302	325	0.85
Cytoplasmic	326	384	0.96