YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SEC20_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPQDVHVR ICNQEIVKFD LEVKALIQDI RDCSGPLSEL TELNTKVKEK FQQLKHRIQE  60
   61 LEQSAKEQDK ESEKQLLLQE VENHKKQMLS NQTSWRKANL TCKLAIDNLE KAELLQGGDS 120
  121 LRQRKTTKES LAQTSSTITE SLMGISRMMS QQVQQSEEAM QTLVSSSRTL LDANEEFKSM 180
  181 SGTIQLGRKL ITKYNRRELT DKLLIFLALA LFLATVLYIV KKRLFPFL

Type	Start	End	Confidence
Cytoplasmic	1	202	0.78
Transmembrane Helix	203	220	0.96
Non-Cytoplasmic	221	228	0.71