YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NTCP2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.93
Transmembrane Helix	28	51	0.84
Cytoplasmic	52	65	0.82
Transmembrane Helix	66	88	0.91
Non-Cytoplasmic	89	96	0.67
Transmembrane Helix	97	119	0.90
Cytoplasmic	120	126	0.86
Transmembrane Helix	127	149	0.90
Non-Cytoplasmic	150	159	0.80
Transmembrane Helix	160	182	0.88
Cytoplasmic	183	192	0.80
Transmembrane Helix	193	216	0.89
Non-Cytoplasmic	217	225	0.76
Transmembrane Helix	226	247	0.91
Cytoplasmic	248	257	0.80
Transmembrane Helix	258	278	0.59
Non-Cytoplasmic	279	285	0.62
Transmembrane Helix	286	309	0.80
Cytoplasmic	310	348	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNSSVCSPN ATFCEGDSCL VTESNFNAIL STVMSTVLTI LLAMVMFSMG CNVEINKFLG  60
   61 HIKRPWGIFV GFLCQFGIMP LTGFILSVAS GILPVQAVVV LIMGCCPGGT GSNILAYWID 120
  121 GDMDLSVSMT TCSTLLALGM MPLCLFIYTK MWVDSGTIVI PYDSIGISLV ALVIPVSIGM 180
  181 FVNHKWPQKA KIILKIGSIA GAILIVLIAV VGGILYQSAW IIEPKLWIIG TIFPIAGYSL 240
  241 GFFLARLAGQ PWYRCRTVAL ETGMQNTQLC STIVQLSFSP EDLNLVFTFP LIYTVFQLVF 300
  301 AAIILGMYVT YKKCHGKNDA EFLEKTDNDM DPMPSFQETN KGFQPDEK