YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149028430, gi...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVGVGGST AAAGAGAVSA GALEPGSATA AHRRLKYISL AVLVVQNASL ILSIRYARTL  60
   61 PGDRFFATTA VVMAEVLKGL TCLLLLFAQK RGNVKHLVLF LHEAVLVQYV DTLKLAVPSL 120
  121 IYTLQNNLQY VAISNLPAAT FQVTYQLKIL TTALFSVLML NRSLSRLQWA SLLLLFTGVA 180
  181 IVQAQQAGGS GPRPLDQNPG VGLAAVVASC LSSGFAGVYF EKILKGSSGS VWLRNLQLGL 240
  241 FGTALGLVGL WWAEGTAVAS QGFFFGYTPA VWGVVLNQAF GGLLVAVVVK YADNILKGFA 300
  301 TSLSIVLSTV ASIRLFGFHL DPLFALGAGL VIGAVYLYSL PRGAVKAIAS ASASASGPCI 360
  361 HQQPPGQPPP PQLSSRGDLI TEPFLPKSVL VK

Type	Start	End	Confidence
Cytoplasmic	1	36	0.49
Transmembrane Helix	37	57	0.82
Non-Cytoplasmic	58	64	0.83
Transmembrane Helix	65	87	0.83
Cytoplasmic	88	166	0.70
Transmembrane Helix	167	187	0.89
Non-Cytoplasmic	188	199	0.89
Transmembrane Helix	200	220	0.95
Cytoplasmic	221	230	0.91
Transmembrane Helix	231	253	0.88
Non-Cytoplasmic	254	267	0.80
Transmembrane Helix	268	289	0.90
Cytoplasmic	290	297	0.74
Transmembrane Helix	298	316	0.94
Non-Cytoplasmic	317	322	0.73
Transmembrane Helix	323	340	0.95
Cytoplasmic	341	392	0.93