YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38322764, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGTLRGLA VAGGGESSDS EDDGWDIGYL DRSSQKLKRS LPVEEKNETF KKALTTGDIS  60
   61 LVKELLDSGI NVDSSFRYGW TPLMYAASVA NVELVRFLLD RGANASFDKD KLTVLITACS 120
  121 ARGSEEQVLK CVELLLSRNA DPNVACRRLM TPIMYAARDG HTQVVALLVA HGAEVNAQDE 180
  181 NGYTALTWAA RQGHKNVILK LLELGANKML QTKDGRTPSE IAKRNKHLEI FNFLSLTLNP 240
  241 LEGKLQQLTK EETICKLLAT DSDKEKDHIF SPYTAFGDLE IFLHGLGLEH MTDLLKERDI 300
  301 TLRHLLTMKK DELTKNGITS KDQQKILAAL KELEVEEINF GKLPEVAKLE ISGDEFLNFL 360
  361 LKLNKQCGHL ITAVQNIITE LPVNSHKIVL EWASPRNFTS VCEELVSNVE DLNEEVCRLK 420
  421 ELIQKMQNER ENDPTHIPLV EEVSPWKTRI LKRSAVTVCG FGLLLFICKL TFQRK

Type	Start	End	Confidence
Non-Cytoplasmic	1	453	0.93
Transmembrane Helix	454	472	0.67
Cytoplasmic	473	475	0.58