YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PO3F3_RAT
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAASNPYL PGNSLLAAGS IVHSDAAGAG GGGGGGGGGG GGAGGGGGGM QPGSAAVTSG  60
   61 AYRGDPSSVK MVQSDFMQGA MAASNGGHML SHAHQWVTAL PHAAAAAAAA AAAAVEASSP 120
  121 WSGSAVGMAG SPQQPPRPPP PPPQGPDVKG GVGREDLHAG TALHHRGPPH LGPPPPPPHQ 180
  181 GHPGGWGAAA AAAAAAAAAA AAAHLPSMAG GQQPPPQSLL YSQPGGFTVN GMLSAPPGPG 240
  241 GGGGGAGGGA QSLVHPGLVR GDTPELAEHH HHHHHHAHPH PPHPHHAQGP PHHGGGGAGP 300
  301 GLNSHDPHSD EDTPTSDDLE QFAKQFKQRR IKLGFTQADV GLALGTLYGN VFSQTTICRF 360
  361 EALQLSFKNM CKLKPLLNKW LEEADSSTGS PTSIDKIAAQ GRKRKKRTSI EVSVKGALES 420
  421 HFLKCPKPSA QEITNLADSL QLEKEVVRVW FCNRRQKEKR MTPPGIQQQT PDDVYSQVGT 480
  481 VSADTPPPHH GLQTSVQ

Type	Start	End	Confidence
Cytoplasmic	1	20	0.63
Transmembrane Helix	21	35	0.48
Non-Cytoplasmic	36	36	0.31
Transmembrane Helix	37	51	0.38
Cytoplasmic	52	95	0.45
Transmembrane Helix	96	118	0.71
Non-Cytoplasmic	119	183	0.54
Transmembrane Helix	184	206	0.82
Cytoplasmic	207	334	0.50
Transmembrane Helix	335	349	0.25
Non-Cytoplasmic	350	497	0.69