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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PTPRN_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRPRRPGGP AGCGGSEGSG GLRLLVCLLL LSGRPGGCSA ISAHGCLFDR RLCSHLEVCI  60
   61 QDGLFGQCQA GVGQARPLLQ VTSPVLQRLQ GVLRQLMSQG LSWHDDLTQY VISQEMERIP 120
  121 RLRPPEPHPR DRSGSVPRRA GPAGELLSQG NPTGSSPAVQ GLSRPPGDGN GAGVGSPLSS 180
  181 LQAELLPPLL EHLLMPPQPP HPSLTYEPAL LQPYLFQQFG SRDGSRGSES ASGVVGHLAK 240
  241 AEDPVLFSRS LSKAILGTHS GHSFGDLTGP SPAQLFQDSG LLYMAQELPV PGRARAPRLP 300
  301 EEGGSSRAED SSEGHEEEVL GGHGEKSPPQ AVQADVSLQR LAAVLAGYGV ELRQLTPEQL 360
  361 STLLTLLQLL PKGTGRHLGG AVNGGADVKK TIEEQMQRGD TADARPPTPL LPGHPTASST 420
  421 SIKVRQVLSP GFPEPPKTSS PLGISAVLLE KKSPLGQSQP TVVGQPSARP SAEEYGYIVT 480
  481 DQKPLSLVAG VKLLEILAEH VHMTSGSFIN ISVVGPAVTF RIRHNEQNLS LADVTQQAGL 540
  541 VKSELEAQTG LQILQTGVGQ REESAAVLPR QAHGISPMRS LLLTLVALAG VAGLLVALAV 600
  601 ALCMRHHSKQ RDKERLAALG PEGAHGDTTF EYQDLCRQHM ATKSLFNRAE GQPEPSRVSS 660
  661 VSSQFSDAAQ ASPSSHSSTP SWCEEPAQAN MDISTGHMIL AYMEDHLRNR DRLAKEWQAL 720
  721 CAYQAEPNTC ATAQGEGNIK KNRHPDFLPY DHARIKLKVE SSPSRSDYIN ASPIIEHDPR 780
  781 MPAYIATQGP LSHTIADFWQ MVWESGCTVI VMLTPLVEDG VKQCDRYWPD EGSSLYHVYE 840
  841 VNLVSEHIWC EDFLVRSFYL KNVQTQETRT LTQFHFLSWP AEGTPASTRP LLDFRRKVNK 900
  901 CYRGRSCPII VHCSDGAGRT GTYILIDMVL NRMAKGVKEI DIAATLEHVR DQRPGLVRSK 960
  961 DQFEFALTAV AEEVNAILKA LPQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle