YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1083693, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITSVQMGLTS TWRYGTGPGI GTVTMVSWGR FICLVLVTMA TLSLARPSFS LVEDTTLEPE  60
   61 DAISSGDDED DTDSSEDFVS ENRSNQRAPY WTNTEKMEKR LHAVPAANTV KFRCPAGGNP 120
  121 TPTMRWLKNG KEFKQEHRIG GYKVRNQHWS LIMESVVPSD KGNYTCLVEN EYGSINHTYH 180
  181 LDVVERSPHR PILQAGLPAN ASTVVGGDVE FVCKVYSDAQ PHIQWIKHVE KNGSKYGPDG 240
  241 LPYLKVLKAA GVNTTDKEIE VLYIRNVTFE DAGEYTCLAG NSIGISFHSA WLTVLPAPVR 300
  301 EKEITASPDY LEIAIYSIGV FLIACMVVTV IFCRMKTTTK KPDFSSQPAV HKL

Type	Start	End	Confidence
Cytoplasmic	1	19	0.51
Transmembrane Helix	20	42	0.80
Non-Cytoplasmic	43	312	0.62
Transmembrane Helix	313	333	0.94
Cytoplasmic	334	353	0.92