YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62653204, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	72	0.98
Transmembrane Helix	73	96	0.92
Cytoplasmic	97	106	0.84
Transmembrane Helix	107	128	0.90
Non-Cytoplasmic	129	146	0.90
Transmembrane Helix	147	166	0.91
Cytoplasmic	167	184	0.84
Transmembrane Helix	185	205	0.92
Non-Cytoplasmic	206	239	0.93
Transmembrane Helix	240	259	0.93
Cytoplasmic	260	291	0.93
Transmembrane Helix	292	314	0.91
Non-Cytoplasmic	315	326	0.88
Transmembrane Helix	327	347	0.91
Cytoplasmic	348	422	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVPPVLLLF LLSSVRATEQ PQVVTEHPSM DAALTGANAS HFWANYTFSD WQNFVGRRRY  60
   61 GAESQNPTVK ALLIVAYSFI IVFSLFGNVL VCHVIFKNQR MHSATSLFIV NLAVADIMIT 120
  121 LLNTPFTLVR FVNSTWVFGK GMCHVSRFAQ YCSLHVSALT LTAIAVDRHQ VIMHPLKPRI 180
  181 SITKGVIYIA VIWVMATFFS LPHAICQKLF TFKYSEDIVR SLCLPDFPEP ADLFWKYLDL 240
  241 ATFILLYLLP LFIISVAYAR VAKKLWLCNT IGDVTTEQYL ALRRKKKTTV KMLVLVVVLF 300
  301 ALCWFPLNCY VLLLSSKAIH TNNALYFAFH WFAMSSTCYN PFIYCWLNEN FRVELKALLS 360
  361 MCQRPSKPQE DRLPSPVPSF RVAWTEKSHG RRALLANHHL PSSQIQSGKT DLSSVEPTVA 420
  421 VS