YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12750772
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CTDNISVQMG LTSTWRYGTG PGIGTVTMVS WGRFICLVLV TMATLSLARP SFSLVEDTTL  60
   61 EPEGAPYWTN TEKMEKRLHA VPAANTVKFR CPAGGNPTPT MRWLKNGKEF KQEHRIGGYK 120
  121 VRNQHWSLIM ESVVPSDKGN YTCLVENEYG SINHTYHLDV VERSPHRPIL QAGLPANAST 180
  181 VVGGDVEFVC KVYSDAQPHI QWIKHVEKNG SKYGPDGLPY LKVLKHSGIN SSNAEVLALF 240
  241 NVTEMDAGEY ICKVSNYIGQ ANQSAWLTVL PKQQAPVREK EITASPDYLE IAIYCIGVFL 300
  301 IACMVVTVIF CRMKTTTKKP DFSSQPAVHK L

Type	Start	End	Confidence
Cytoplasmic	1	22	0.72
Transmembrane Helix	23	45	0.70
Non-Cytoplasmic	46	290	0.91
Transmembrane Helix	291	311	0.92
Cytoplasmic	312	331	0.87