YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12750770
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CYHNISVQMG LTSTWRYGTG PGIGTVTMVS WGRFICLVLV TMATLSLARP SFSLVEDTTL  60
   61 EPEEPPTKYQ ISQPEACVVA PGESLELRCM LKDAAVISWT KDGVHLGPNN RTVLIGEYLQ 120
  121 IKGATPRDSG LYACAAARTV DSETLYFMVN VTDAISSGDD EDDTDSSEDF VSENRSNQRA 180
  181 PYWTNTEKME KRLHAVPAAN TVKFRCPAGG NPTPTMRWLK NGKEFKQEHR IGGYKVRNQH 240
  241 WSLIMESVVP SDKGNYTCLV ENEYGSINHT YHLDVVERSP HRPILQAGLP ANASTVVGGD 300
  301 VEFVCKVYSD AQPHIQWIKH VEKNGSKYGP DGLPYLKVLK HSGINSSNAE VLALFNVTEM 360
  361 DAGEYICKVS NYIGQANQSA WLTVLPKQQA PVREKEITAS PDYLEIAIYC IGVFLIACMV 420
  421 VTVIFCRMKT TTKKPDFSSQ PAVHKL

Type	Start	End	Confidence
Cytoplasmic	1	22	0.77
Transmembrane Helix	23	45	0.72
Non-Cytoplasmic	46	405	0.97
Transmembrane Helix	406	426	0.93
Cytoplasmic	427	446	0.92