YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109124366
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLFHFGNCF ALAYFPYFIT YKCSGLSEYN AFWKCVQAGV TYLFVQLCKM LFLATFFPTW  60
   61 EGGIYDFIGE FMKASVDVAD LIGLNLVMSR NAGKGEYKIM VAALGWATAE LIMSRCIPLW 120
  121 VGARGIEFDW KYIQMSIDSN ISLVHYIVAS AQVWMITRYD LYHTFRPAVL LLMFLSVYKA 180
  181 FVMETFVHLC SLGSWTALLA RAVVTGLLAL STLALYVAVV NVHS

Type	Start	End	Confidence
Cytoplasmic	1	39	0.71
Transmembrane Helix	40	59	0.64
Non-Cytoplasmic	60	98	0.51
Transmembrane Helix	99	122	0.71
Cytoplasmic	123	136	0.45
Transmembrane Helix	137	156	0.62
Non-Cytoplasmic	157	162	0.46
Transmembrane Helix	163	183	0.82
Cytoplasmic	184	196	0.44
Transmembrane Helix	197	220	0.89
Non-Cytoplasmic	221	224	0.53