YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149022467, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVNISYVS EFILKGITDR PELQVPCFVV FLTIYLVTVI GNIGLIVIIR VDSRLHTPMY  60
   61 FFLSHLAFVD LCYSSAITPK MMVNFVVERN TIPFHACATQ LGCFLTFMIT ECFLLASMAY 120
  121 DRYVAICSPL HYSTLMSKRV CIQLVAVPYV YSFLVALFHT IITFRLTYCG PNVINHFYCD 180
  181 DLPLLALSCS DTHMKEILIF AFAGFDMICS SSIVLTSYLF IIAAILRIRS TQGRRKAIST 240
  241 CGSHMVAVTI FYGTLIFMYL QPKSNHSLDT DKMASVFYTV VIPMLNPLIY SLRNKEVKDA 300
  301 SKKALDKGYE TLKLLKLNK

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.80
Transmembrane Helix	27	49	0.90
Cytoplasmic	50	58	0.69
Transmembrane Helix	59	77	0.84
Non-Cytoplasmic	78	95	0.76
Transmembrane Helix	96	119	0.81
Cytoplasmic	120	139	0.90
Transmembrane Helix	140	162	0.89
Non-Cytoplasmic	163	201	0.92
Transmembrane Helix	202	226	0.85
Cytoplasmic	227	239	0.84
Transmembrane Helix	240	260	0.92
Non-Cytoplasmic	261	273	0.91
Transmembrane Helix	274	292	0.73
Cytoplasmic	293	319	0.75