YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMEDA_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLSGPLSW PGPLLSALLF LFLLGPSSVL GISFHLPVNS RKCLREEIHK DLLVTGAYEI  60
   61 TDQSGGAGGL RTHLKITDSA GHILYAKEDA TKGKFAFTTE DYDMFEVCFE SKGTGRIPDQ 120
  121 LVILDMKHGV EAKNYEEIAK VEKLKPLEVE LRRLEDLSES IVNDFAYMKK REEEMRDTNE 180
  181 STNTRVLYFS IFSMFCLIGL ATWQVFYLRR FFKAKKLIE

Type	Start	End	Confidence
Signal Peptide	1	31	0.99
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	185	0.99
Transmembrane Helix	186	207	0.94
Cytoplasmic	208	219	0.94