YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.66
Transmembrane Helix	20	43	0.85
Non-Cytoplasmic	44	141	0.70
Transmembrane Helix	142	161	0.69
Cytoplasmic	162	171	0.80
Transmembrane Helix	172	191	0.91
Non-Cytoplasmic	192	196	0.85
Transmembrane Helix	197	218	0.93
Cytoplasmic	219	227	0.85
Transmembrane Helix	228	250	0.92
Non-Cytoplasmic	251	257	0.79
Transmembrane Helix	258	278	0.94
Cytoplasmic	279	339	0.98
Transmembrane Helix	340	361	0.92
Non-Cytoplasmic	362	371	0.81
Transmembrane Helix	372	393	0.91
Cytoplasmic	394	400	0.85
Transmembrane Helix	401	420	0.95
Non-Cytoplasmic	421	428	0.77
Transmembrane Helix	429	450	0.91
Cytoplasmic	451	460	0.78
Transmembrane Helix	461	482	0.87
Non-Cytoplasmic	483	488	0.79
Transmembrane Helix	489	509	0.89
Cytoplasmic	510	553	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDYDEVIAF LGDWGPFQRL IFFLLSASII PNGFNGMSVV FLAGTPEHRC LVPHTVNLSS  60
   61 AWRNHSIPLE TKDGRQVPQS CRRYRLATIA NFSALGLEPG LDVDLEQLEQ ESCLDGWEYS 120
  121 KDVFLSTIVT EWNLVCEDDW KTPLTTSLFF VGVLCGSFVS GQLSDRFGRK KVLFATMAVQ 180
  181 TGFSFVQIFS TNWEMFTVLF AIVGMGQISN YVVAFILGTE ILSKSVRILF STLGVCTFFA 240
  241 IGYMVLPLFA YFIRDWRMLL LALTLPGLFC VPLWWFIPES PRWLISQRRF EEAEQIIQKA 300
  301 AKMNGIMAPA VIFDPLELQE LNSLKQQKVF ILDLFKTRNI ATITVMSVML WMLTSVGYFA 360
  361 LSLNVPNLHG DVYLNCFLSG LIEVPAYFTA WLLLRTLPRR YIIAGVLFWG GGVLLLVQVV 420
  421 PEDYNFVSIG LVMLGKFGVT SAFSMLYVFT AELYPTLVRN MAVGITSMAS RVGSIIAPYF 480
  481 VYLGAYNRLL PYILMGSLTV LIGIITLFFP ESFGVTLPEN LEQMQKVRGF RCGKKSTVSM 540
  541 DREENPKVLI TAF