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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CADH1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGARCRSFSA LLLLLQVSSW LCQQPESESD SCRPGFSSEV YTFLVPERHL ERGHILGRVK  60
   61 FEGCTGRPRT AFFSEDSRFK VSTDGVITVK RHLKLHKLET SFLVHAWDSS YRKLSTKVTL 120
  121 KSLGHHHHRH HHRDPVSESN PELLTFPSFH QGLRRQKRDW VIPPINCPEN QKGEFPQRLV 180
  181 QIKSNRDKET TVFYSITGPG ADKPPVGVFI IERETGWLKV TQPLDREAID KYLLYSHAVS 240
  241 SNGEAVEDPM EIVVTVTDQN DNRPEFIQEV FEGSVAEGAL PGTSVMQVSA TDADDDINTY 300
  301 NAAIAYTILS QDPELPHKNM FTVNRDTGVI SVVTSGLDRE SYPTYTLVVQ AADLQGEGLS 360
  361 TTAKAVITVK DINDNAPIFN PSTYQGQVLE NEVGARIATL KVTDDDAPNT PAWNAVYTVV 420
  421 NDPDHQFTVI TDPKTNEGIL KTAKGLDFEA KQQYILHVTV ENEEPFEGSL VPSTATVTVD 480
  481 VVDVNEAPIF VPAEKRVEVP EDFGVGLEIA SYTAREPDTF MEQKITYRIW RDTANWLEIN 540
  541 PETGVISTRA EMDREDSEHV KNSTYTALII ATDDGSPIAT GTGTLLLVLS DVNDNAPIPE 600
  601 PRNMQFCQRN PKPHVITILD PDLPPNTSPF TAELTHGASV NWTIEYNDAE QESLILQPRK 660
  661 DLEIGEYKIN LKLSDNQNKD QVTTLEVHVC DCEGTVNNCM KAISLEAGLQ VPAILGILGG 720
  721 ILALLILILL LLLFLRRRTV VKEPLLPPDD DTRDNVYYYD EEGGGEEDQD FDLSQLHRGL 780
  781 DARPEVIRND VAPTLMSMPQ YRPRPANPDE IGNFIDENLK AADSDPTAPP YDSLLVFDYE 840
  841 GSGSEAASLS SLNSSESDQD QDYDYLNEWG NRFKKLADMY GGGEED

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle