YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149031603, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSAGLPVR LLLLLLLLLL WSVAPQALRP VTKLRVVPES HILQVILGCE VHEDNSTSGF  60
   61 WKYGYDGQDH LEFCPKTLNW SAAEPRAWAT KMEWEEHRIR ARQSRDYLQR DCPQQLKQVL 120
  121 ELQRGVLGQQ VPTLVKVTRH WASTGTSLRC QALNFFPQNI TMRWLKDSQP LDAKDVNPEN 180
  181 VLPNGDGTYQ GWLTLAVAPG EETRFSCQVE HPGLDQPLTA TWEPSRSQDM IIGIISGITI 240
  241 CAIFFVGILI LVLRKRKVSG GTMGDYVLTE CE

Type	Start	End	Confidence
Signal Peptide	1	25	0.99
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	230	0.99
Transmembrane Helix	231	253	0.96
Cytoplasmic	254	272	0.99