YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149031607, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSAGLPVR LLLLLLLLLL WSVAPQALRP VPTLVKVTRH WASTGTSLRC QALNFFPQNI  60
   61 TMRWLKDSQP LDAKDVNPEN VLPNGDGTYQ GWLTLAVAPG EETRFSCQVE HPGLDQPLTA 120
  121 TWEPSRSQDM IIGIISGITI CAIFFVGILI LVLRKRKVSG GTMGDYVLTE CE

Type	Start	End	Confidence
Signal Peptide	1	25	0.99
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	130	0.98
Transmembrane Helix	131	153	0.96
Cytoplasmic	154	172	0.99