YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LT4R1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANTTSTAA TSSPGGMSLS LLPIVLLSVA LVVGLPGNSF VVWSILKRMQ KRSVTALLVL  60
   61 NLALADLAVL LTAPFFLHFL ARGTWSFEVT GCRLCHYVCG VSMYASVLLI TIMSLDRSLA 120
  121 VARPFVSQKV RTKAFARWVL AGIWVVSFLL AIPVLVYRTV TPKNKTLICD SRYPSDGHKV 180
  181 FHLLFEAITG FLLPFLAVVA SYSDIGRRLQ ARRFRRSRRT GRLVVLIILA FAAFWLPYHL 240
  241 VNLVEAGRTL AGWDKNSPAG QRLKLARYVL IALAFLSSSV NPVLYACAGG GLLRSAGVGF 300
  301 VVKLLEGTGS EVSSTRRGGT LVQTPKATPT CPEPGPTDSF MTSSTPPESS K

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.93
Transmembrane Helix	21	43	0.91
Cytoplasmic	44	56	0.80
Transmembrane Helix	57	77	0.94
Non-Cytoplasmic	78	93	0.86
Transmembrane Helix	94	115	0.92
Cytoplasmic	116	133	0.95
Transmembrane Helix	134	157	0.89
Non-Cytoplasmic	158	182	0.93
Transmembrane Helix	183	202	0.95
Cytoplasmic	203	219	0.91
Transmembrane Helix	220	241	0.88
Non-Cytoplasmic	242	267	0.94
Transmembrane Helix	268	293	0.70
Cytoplasmic	294	351	0.89