YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEX12_RAT
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEHGAHITT ASVADDQPSI FEVVAQDSLM TAVRPALQHV VKVLAESNPA HYGFFWRWFD  60
   61 EIFTLLDFLL QQHYLSRTSA SFSEHFYGLK RIVAGSSPQL QRPASAGLPK EHLWKSAMFL 120
  121 VLLPYLKVKL EKLASTLREE DEYSIHPPSS HWKRFYRVFL AAYPFVTMTW EGWFLTQQLR 180
  181 YILGKAEHHS PLLKLAGVRL GRLTAQDIQA MEHRLVEASA MQEPVRSIGK KIKSALKKAV 240
  241 GGVALSLSTG LSVGVFFLQF LDWWYSSENQ ETIKSLTALP TPPPPVHLDY NSDSPLLPKM 300
  301 KTVCPLCRKA RVNDTVLATS GYVFCYRCVF NYVRSHQACP ITGYPTEVQH LIKLYSPEN

Type	Start	End	Confidence
Cytoplasmic	1	238	0.70
Transmembrane Helix	239	260	0.76
Non-Cytoplasmic	261	359	0.91