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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LCAP_RAT
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METFTNDRLQ LPRNMIENSM FEEEPDVVDL AKEPCLHPLE PDEVEYEPRG SRLLVRGLGE  60
   61 HEMDEDEEDY ESSAKLLGMS FMNRSSGLRN SATGYRQSPD GTCSVPSART LVICVFVIVV 120
  121 AVSVIMVIYL LPRCTFTKEG CHKTNQSAEL IQPIATNGKV FPWAQIRLPT AIIPQRYELS 180
  181 LHPNLTSMTF RGSVTISLQA LQDTRDIILH STGHNISSVT FMSAVSSQEK QVEILEYPYH 240
  241 EQIAVVAPES LLTGHNYTLK IEYSANISNS YYGFYGITYT DKSNEKKNFA ATQFEPLAAR 300
  301 SAFPCFDEPA FKATFIIKIT RDEHHTALSN MPKKSSVPTE EGLIQDEFSE SVKMSTYLVA 360
  361 FIVGEMRNLS QDVNGTLVSV YAVPEKIDQV YHALDTTVKL LEFYQNYFEI QYPLKKLDLV 420
  421 AIPDFEAGAM ENWGLLTFRE ETLLYDNATS SVADRKLVTK IIAHELAHQW FGNLVTMQWW 480
  481 NDLWLNEGFA TFMEYFSVEK IFKELNSYED FLDARFKTMR KDSLNSSHPI SSSVQSSEQI 540
  541 EEMFDSLSYF KGASLLLMLK SYLSEDVFQH AIILYLHNHS YAAIQSDDLW DSFNEVTGKT 600
  601 LDVKKMMKTW TLQKGFPLVT VQRKGTELLL QQERFFPSMQ PEIQDSDTSH LWHIPISYVT 660
  661 DGRNYSEYRS VSLLDKKSDV INLTEQVQWV KVNTNMTGYY IVHYAHDGWA ALINQLKRNP 720
  721 YVLSDKDRAN LINNIFELAG LGKVPLQMAF DLIDYLRNET HTAPITEALF QTDLIYNLLE 780
  781 KLGHMDLSSR LVTRVHKLLQ NQIQQQTWTD EGTPSMRELR SALLEFACAH SLENCTTMAT 840
  841 KLFDGWMASN GTQSLPTDVM TTVFKVGART EKGWLFLFSM YSSMGSEAEK DKILEALASS 900
  901 ADAHKLYWLM KSSLDGDIIR TQKLSLIIRT VGRQFPGHLL AWDFVKENWN KLVHKFHLGS 960
  961 YTIQSIVAGS THLFSTKTHL SEVQEFFENQ SEATLQLRCV QEAFEVIELN IQWMARNLKT1020
 1021 LTLWL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle