YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYT12_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDVTEYHL SVIKSPPGWE VGVYAAGALA LLGIAAVSLW KLWTSGSFPS PSPFPNYDYR  60
   61 YLQQKYGEAY VEAKLKRVPP WNAQRTTTRG PPSRKGSLSI EDTFESISEL GPLELMGREL 120
  121 DLAPYGTLRK SQSADSLNSI SSVSNTFGQD FTLGQVEVSM DYDGASHTLH VAVLQGKDLL 180
  181 EREEATFESC FMRVSLLPDE QIVGISRIQR NAYSIFFDEK FSVPLDPTAL EEKSLRFSVF 240
  241 GIDEDERNVS TGVVELKLSV LDLPLQPFSG WLYLQDQNKA ADAVGEILLS LSYLPTAERL 300
  301 TVVVVKAKNL IWTNDKTTAD PFVKVYLLQD GRKMSKKKTA VKRDDPNPVF NEAMIFSVPA 360
  361 IVLQDLSLRV TVAESSSDGR GDNVGHVIIG PGASGMGTTH WNQMLATLRR PVSMWHPVRR 420
  421 N

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	43	0.94
Non-Cytoplasmic	44	421	0.91