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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: JAG2_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GACCDGDGRT TRAGGCGRDE CDTYVRVCLK EYQAKVTPTG PCSYGYGATP VLGSNSFYLP  60
   61 PAGAAGDRAR ARSRTGGHQD PGLVVIPFQF AWPRSFTLIV EAWDWDNDTT PDEELLIERV 120
  121 SHAGMINPED RWKSLHFSGH VAHLELQIRV RCDENYYSAT CNKFCRPRND FFGHYTCDQY 180
  181 GNKACMDGWM GKECKEAVCK QGCNLLHGGC TVPGECRCSY GWQGKFCDEC VPYPGCVHGS 240
  241 CVEPWHCDCE TNWGGLLCDK DLNYCGSHHP CVNGGTCINA EPDQYLCACP DGYLGKNCER 300
  301 AEHACASNPC ANGGSCHEVL SGFECHCPSG WSGPTCALDI DECASNPCAA GGTCVDQVDG 360
  361 FECICPEQWV GATCQLDANE CEGKPCLNAF SCKNLIGGYY CDCLPGWKGA NCHININDCH 420
  421 GQCQHGGTCK DLVNGYQCVC PRGFGGRHCE LEYYKCASSP CRRGGICEDL VDGFRCHCPR 480
  481 GLSGPLCEVD VDLWCEPNPC LNGARCYNLE DDYYCACPED FGGKNCSVPR ETCPGGACRV 540
  541 IDGCGFEAGS RAHGAAPSGV CGPHGHCVSL PGGNFSCICD SGFTGTYCHE NIDDCMGQPC 600
  601 RNGGTCIDEV DSFACFCPSG WEGELCDINP NDCLPDPCHS RGRCYDLVND FYCVCDDGWK 660
  661 DKTCHSREFQ CDAYTCSNGG TCYDSGDTFR CACPPGWKGS TCTIAKNSSC VPNPCVNGGT 720
  721 CVGSGDSFSC ICRDGWEGRT CTHNTNDCNP LPCYNGGICV DGVNWFRCEC APGFAGPDCR 780
  781 INIDECQSSP CAYGATCVDE INGYRCSCPP GRSGPRCQEV VIFTRPCWSR GVSFPHGSSW 840
  841 VEDCNSCRCL DGHRDCSKVW CGWKPCLLSP QPSALSAQCP PGQQCREKAM GQCLQPPCEN 900
  901 WGECTAEDPL PPSTPCLPRT THLDNNCARL TLHFNRDQVP QGTTVGAICS GIRALPATRA 960
  961 AARDRLLLLL CDRASSGASA VEVAVSFSPA RDLPDSSLIQ STAHAIVAAI TQRGNSSLLL1020
 1021 AVTEVKVETV VMGGSSTGLL VPVLCSVFSV LWLACMVICV WWTRKRRKER ERSRLPRDES1080
 1081 ANNQWAPLNP IRNPIERPGS SGLGTGGHKD VLYQCKNFTP PPRRAGEALP GPASHGAGGE1140
 1141 DEEDEELSRG DGRLSRSREV PLTQIHQRPQ LLPGKASLLA PGPKVDNRAV RSTKDVRCAG1200
 1201 RE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle