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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NEO1_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAAKNGSPPQ SAGASVRTFT PLYFLVEPVD TLSVRGSSVI LNCSAYSEPS PNIEWKKDGT  60
   61 FLNLVSDDRR QLLPDGSLFI SNVVHSKHNK PDEGFYQCVA TVDNLGTIVS RTAKLAVAGL 120
  121 PRFTSQPEPS SIYVGNSGIL NCEVNADLVP FVRWEQNRQP LLLDDRIVKL PSGTLVISNA 180
  181 TEGDEGLYRC IVESGGPPKF SDEAELKVLQ ESEEMLDLVF LMRPSSMIKV IGQSAVLPCV 240
  241 ASGLPAPVIR WMKNEDVLDT ESSGRLALLA GGSLEISDVT EDDAGTYFCV ADNGNKTIEA 300
  301 QAELTVQVPP EFLKQPANIY ARESMDIVFE CEVTGKPAPT VKWVKNGDVV IPSDYFKIVK 360
  361 EHNLQVLGLV KSDEGFYQCI AENDVGNAQA GAQLIILEHA PATTGPLPSA PRDVVASLVS 420
  421 TRFIKLTWRT PASDPHGDNL TYSVFYTKEG VARERVENTS QPGEMQVTIQ NLMPATVYIF 480
  481 KVMAQNKHGS GESSAPLRVE TQPEVQLPGP APNIRAYATS PTSITVTWET PLSGNGEIQN 540
  541 YKLYYMEKGT DKEQDVDVSS HSYTINGLKK YTEYSFRVVA YNKHGPGVST QDVAVRTLSD 600
  601 VPSAAPQNLS LEVRNSKSIV IHWQPPSSAT QNGQITGYKI RYRKASRKSD VTETVVTGTQ 660
  661 LSQLIEGLDR GTEYNFRVAA LTVNGTGPAT DWLSAETFES DLDESRVPEV PSSLHVRPLV 720
  721 TSIVVSWTPP ENQNIVVRGY AIGYGIGSPH AQTIKVDYKQ RYYTIENLDP SSHYVITLKA 780
  781 FNNVGEGIPL YESAVTRPHT DTSEVDLFVI NAPYTPVPDP TPMMPPVGVQ ASILSHDTIR 840
  841 ITWADNSLPK HQKITDSRYY TVRWKTNIPA NTKYKNANAT TLSYLVTGLK PNTLYEFSVM 900
  901 VTKGRRSSTW SMTAHGATFE LVPTSPPKDV TVVSKEGKPR TIIVNWQPPS EANGKITGYI 960
  961 IYYSTDVNAE IHDWVIEPVV GNRLTHQIQE LTLDTPYYFK IQARNSKGMG PMSEAVQFRT1020
 1021 PKADSSDKMP NDQALGSAGK GGRLPDLGSD YKPPMSGSNS PHGSPTSPLD SNMLLVIIVS1080
 1081 IGVITIVVVV IIAVFCTRRT TSHQKKKRAA CKSVNGSHKY KGNCKDVKPP DLWIHHERLE1140
 1141 LKPIDKSPDP NPVMTDTPIP RNSQDITPVD NSMDSNIHQR RNSYRGHESE DSMSTLAGRR1200
 1201 GMRPKMMMPF DSQPPQQSVR NTPSTDTMPA SSSQTCCTDH QDPEGATSSS YLASSQEEDS1260
 1261 GQSLPTAHVR PSHPLKSFAV PAIPPPGPPI YDPALPSTPL LSQQALNHHL HSVKTASIGT1320
 1321 LGRSRPPMPV VVPSAPEVQE ATRMLEDSES SYEPDELTKE MAHLEGLMKD LNAITTA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle