YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AT1B1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGKAKEEG SWKKFIWNSE KKEFLGRTGG SWFKILLFYV IFYGCLAGIF IGTIQVMLLT  60
   61 ISELKPTYQD RVAPPGLTQI PQIQKTEISF RPNDPKSYEA YVLNIIRFLE KYKDSAQKDD 120
  121 MIFEDCGSMP SEPKERGEFN HERGERKVCR FKLDWLGNCS GLNDESYGYK EGKPCIIIKL 180
  181 NRVLGFKPKP PKNESLETYP LTMKYNPNVL PVQCTGKRDE DKDKVGNIEY FGMGGFYGFP 240
  241 LQYYPYYGKL LQPKYLQPLL AVQFTNLTLD TEIRIECKAY GENIGYSEKD RFQGRFDVKI 300
  301 EVKS

Type	Start	End	Confidence
Cytoplasmic	1	34	0.89
Transmembrane Helix	35	57	0.90
Non-Cytoplasmic	58	304	0.92