YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CEGT_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLDLAQEG MALFGFVLFV VLWLMHFMSI IYTRLHLNKK ATDKQPYSKL PGVSLLKPLK  60
   61 GVDPNLINNL ETFFELDYPK YEVLLCVQDH DDPAIEVCKK LLGKYPNVDA RLFIGGKKVG 120
  121 INPKINNLMP AYEVAKYDLI WICDSGIRVI PDTLTDMVNQ MTERVGLVHG LPYVADRQGF 180
  181 AATLEQVYFG TSHPRSYISA NVTGFKCVTG MSCLMRKDVL DQAGGLIAFA QYIAEDYFMA 240
  241 KAIADRGWKF SMSTQVAMQN SGSYSISQFQ SRMIRWTKLR INMLPATIIC EPISECFVAS 300
  301 LIIGWAAHHV FRWDIMVFFM CHCLAWFIFD YIQLRGVQGG TLCFSKLDYA VAWFIRESMT 360
  361 IYIFLSALWD PTISWRAGRY RLRCGGTAEE ILDV

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.84
Transmembrane Helix	12	32	0.92
Cytoplasmic	33	280	0.96
Transmembrane Helix	281	305	0.74
Non-Cytoplasmic	306	309	0.59
Transmembrane Helix	310	332	0.79
Cytoplasmic	333	351	0.62
Transmembrane Helix	352	373	0.59
Non-Cytoplasmic	374	394	0.45