YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CP4B1_RAT
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNFLSPSL SRLGLWASVV ILMVIVLKLF SLLLRRQKLA RAMDSFPGPP THWLFGHALE  60
   61 IQKLGSLDKV VSWAQQFPHA HPLWFGQFVG FLNIYEPDYA KAVYSRGDPK AADVYDFFLQ 120
  121 WIGKGLLVLD GPKWFQHRKL LTPGFHYDVL KPYVAIFAES TRMMLDKWEK KASENKSFDI 180
  181 FCDVGHMALD TLMKCTFGKG DSGLGHRDNS YYLAVSDLTL LMQQRIDSFQ YHNDFIYWLT 240
  241 PHGRRFLRAC KIAHDHTDEV IRQRKAALQD EKERKKIQQR RHLDFLDILL GVRDESGIKL 300
  301 SDAELRAEVD TFMFEGHDTT TSGISWFLYC MALYPEHQQL CREEVRGILG DQDSFQWDDL 360
  361 AKMTYLTMCM KECFRLYPPV PQVYRQLNKP VTFVDGRSLP AGSLISLHIY ALHRNSTVWP 420
  421 DPEVFDPLRF SPENAAGRHP FAFMPFSAGP RNCIGQQFAM NEMKVVTALC LLRFEFSLDP 480
  481 SKMPIKVPQL ILRSKNGIHL YLKPLASRSG K

Type	Start	End	Confidence
Cytoplasmic	1	11	0.50
Transmembrane Helix	12	32	0.85
Non-Cytoplasmic	33	511	0.67