YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EMD_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDYAVLSDT ELAAVLRQYN IPHGPILGST RKLYEKKIFE YETQRRRLSP PSSSSSSFSY  60
   61 RFSDLDSASV DSDMYDLPKK EDALLYQSKD YNDDYYEESY LTTRTYGEPE SVGMSKSFRR 120
  121 PGTSLVDADD TFHHQVRDDI FSSSEEEGKD RERPIYGRDS AYQSIAEYRP ISNVSRSSLG 180
  181 LSYYPRSSTS SVSSSSSSPS SWLTRRAIRP EKQAPTAALG QDRQVPLWGQ LLLFLAFATF 240
  241 LLFVYYSIQA QEGNPFWMDP

Type	Start	End	Confidence
Cytoplasmic	1	226	0.83
Transmembrane Helix	227	248	0.92
Non-Cytoplasmic	249	260	0.81