YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SERC5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.76
Transmembrane Helix	38	59	0.94
Non-Cytoplasmic	60	89	0.97
Transmembrane Helix	90	112	0.89
Cytoplasmic	113	125	0.89
Transmembrane Helix	126	145	0.96
Non-Cytoplasmic	146	152	0.91
Transmembrane Helix	153	174	0.91
Cytoplasmic	175	193	0.89
Transmembrane Helix	194	218	0.90
Non-Cytoplasmic	219	230	0.87
Transmembrane Helix	231	251	0.91
Cytoplasmic	252	258	0.86
Transmembrane Helix	259	278	0.70
Non-Cytoplasmic	279	310	0.76
Transmembrane Helix	311	333	0.78
Cytoplasmic	334	390	0.88
Transmembrane Helix	391	412	0.90
Non-Cytoplasmic	413	427	0.84
Transmembrane Helix	428	449	0.89
Cytoplasmic	450	460	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARCCAGQL ACCCGSAGCA LCCGCCPKFR QSRSTRFMYL FYFTLVIIPC CVMMSPSVMK  60
   61 QMTEHIPFFE DFCKGIKAGD TCENLVGYSA VYRVCFGMAC FFFVFCVLTF KVNNSKSCRA 120
  121 SIHNGFWFFK LLLLGAMCSG AFFIPDQETF LNVWRYVGAV GSFFFICIQL LLIVEFAHKW 180
  181 NKNWTAGTVR NKLWYASLSL ALIMYSIAVG GLALMAVFYT QWDDCMDNKI LLGVHGGLCV 240
  241 LISLAAISPC VQNRQPHSGL LQPGLISCYV TYLTFSALTS KPEKVVKDEH GKNVTICVPD 300
  301 FGQDFRRDES MVTWLGTLLL VVCISYSCLT STTRSSSDAL QRRYGAPELE VARCCFCFGP 360
  361 DGEDTEEQQN VKEGPRVIYD EKKGTVYSYS YFHFVLLLAS LYVMMTLTSW FHYENATIET 420
  421 FFVGSWSIFW VKMASCWMCV LLYLWTLVAP LCCPSRQFSV