YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CL2D5_RAT
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSAHLQDP PPLLSRTLTQ NEGQTSLRQS SSCGPSAASA SESLSGSTES RIPHSKMLQG  60
   61 KLPRNIPLEY PAGLYCCYVV IIVLSVAVVA LSVALSVKKT AQISTINTYA ACPRNWIGVG 120
  121 NKCFYFNEIP SNWTLSQTLC KEQGAELARF DTEEELNFLR RYKGSSGYWF GLHRESSAHP 180
  181 WKWTDNTEYN NSVSIGGDEK HGFLSDNGFS SGRGYIVRKS ICRKPNSYTS QCL

Type	Start	End	Confidence
Cytoplasmic	1	73	0.78
Transmembrane Helix	74	95	0.90
Non-Cytoplasmic	96	233	0.85