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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: IGSF1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLRTFTLLL LCIWLNRGMT SMAAVESQPE LWIESNYPQA PWENITLWCK SPSRVSSKFL  60
   61 LLKDNTQMTW IHPPYKTFQV SFFIGALTES NTGLYRCCYW NEKGWSKPSK ILELEAPGQL 120
  121 PKPIFWIQAE TPPFPGCNVN ILCHGWLQDL VFMLFKEGYT EPIDYQVPTG TMAIFSIDNL 180
  181 APENEGIYIC RTHIQMLPTL WSEPSNPLKL VVAGLYPKPT LTAHPGPILA PGESLSLRCQ 240
  241 GPIYGMTFAL MRLEDLKKPY YYKKPIKNEA YFYFQALKTQ DTGHYLCFYY DGSYRGSLLS 300
  301 DILKIWVTDT FPKTWLLVQP SPVIQMGQNV SLRCGGLMDG VGLALHKKGE EKPLQFLDAT 360
  361 SNTGNNSFFL KNVTYRDAGI YSCHYYLTWK TSIKMATYNT VELIVVAWPS SVFKVGKTIT 420
  421 LQCRVSHPVL EFSLEWEETT TFQKFSVDGD FIITNIEGQG TGTYSCSYRI ESHANIWSHR 480
  481 SEPLKLVGPA VTGFLPWNSI LNEAIRVSLT VQFLSLLLLV LWLQWKCRRL RLREAWLLGT 540
  541 AQGVAMLVIL IALLCCGLCN GALTEEIEII MPTPKPELWA ETNFPQAPWK NVTLWCRSPS 600
  601 GSTKEFVLLK DGTGWIATRP ASEQVRAAFP LGALTQSHTG SYHCHSWEEM AVSEPSEALE 660
  661 LVGTDILPKP VISASLPIRG QELQIRCKGW LEGLGFALYK MGEQEPVQQL GAVGREAFFT 720
  721 IQRMEDKEEG NYSCRTHTEK QPFKWSEPSA PLELVIKELY PKPFFKTWAS PVVTPGSRVT 780
  781 FNCSTSREHM SFILYKDGNE IASSDPVWGN PGTSTAHFLI ISVGIGDGGN YSCRYYDFSI 840
  841 WSEPSDPVEL IVTEFYPKPT LLAQPGPVVL PGKNVTLRCQ GIFQGMRFAL LQEGAHAPLQ 900
  901 FQSASGTSVD FLLHTVGAED FGNYSCVYYE TTMSNRGSYL STPLMIWVTD TFPRPWLSAE 960
  961 PSSVVTMGQN VTLWCQGPVH GVGYILHKEG EATSMQLWDS TSNEGAFPII NISGASIGRY1020
 1021 SCCYHPDWMS PIKIQPSNTL ELIVTGLLPK PSLLVQPGPM VVPGENMTFQ CQGELPDSTF1080
 1081 VLLKEGTQQP IEQQRPSGYR ADFWMPVVRD QDSGVYSCVY YLDSAPLVAS NHSNSLEIWV1140
 1141 TDKPPKPSLS AWPSTVFKLG KDITLQCRGP LPGVEFVLEH DGEEAPQQFS EDGDFVIGNM1200
 1201 EGKGIGNYSC SYRLQAYPDI WSEPSDSLEL VGAAGPVAQE CTVGNIVRST LIVVVVVALG1260
 1261 IVLAIEWKKW PRLRTRGSET DGRDQTIVLE ECNQDGEPGT ATNSPSSALQ GVSVEQTVPI1320
 1321 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle