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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ROS1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.88
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRIRWLTPK PATFVVLGCV WISVAQGTIL SSCLTSCVTN LGRQLDSGTR YNLSEACIQG  60
   61 CQFWNSIDQE KCALKCNDTY VTICERESCE VGCSNAEGSY EEEVLDNTEL PTAPFASSIG 120
  121 SNGVTLRWNP ANISGVKYII QWKYAQLPGS WAYTETVSKL SYMVEPLHPF TEYIFRVVWI 180
  181 FTAQLHLYSP PSPSYRTHPY GVPETAPFIT NIESSSPDTV EVSWAPPYFP GGPILGYNLR 240
  241 LISKTQKLDS GTQRTSFQFY STLPNTTYRF SIAAVNEVGE GPEAESMITT PSPAVQEEEQ 300
  301 WLFLSRKTSL RKRSLKYLVD EAHCLWSDAI RHNITGISVN TQQEVVYFSE GTIIWMKGAA 360
  361 NMSDVSDLRI FYRGSALVSS ISVDWLYQRM YFIMDNRVHV CDLKHCSNLE EITPFSIVAP 420
  421 QKVVVDSYNG YVFYLLRDGI YRVHLPLPSV RDTKAVRIVE SGTLKDFAVK PQSKRIIYFN 480
  481 GTMQVFMSTF LDGSAFHRVL PWVPLADVKS FACENNDFLI TDGKAIFQQD SLSFNEFIVG 540
  541 CDLSHIEEFG FGNLVIFGSS VQSYPLPGHP QEVSVLFGSR EALIQWKPPI LAIGASPSAW 600
  601 QNWTYEVKVS SQDILETTQV FLNISRTVLN VPKLQSSTKY MVSVRASSPK GPGPWSEPSV 660
  661 GTTLVPATEP PFIMAVKEDG LWSKPLSSFG PGEFLSSDVG NVSDMDWYNN SLYYSDTKGN 720
  721 VYVRPLNGMD ISENYHISSI AGACALAFEW LGHFLYWAGK TYVIQRQSVL TGHTDIVTHV 780
  781 KLLVNDMAVD PVGGYLYWTT LYSVESTRLN GESSLVLQAQ PWLSGKKVIA LTLDLSDGLL 840
  841 YWLVQDNQCI HLYTAVLRGW SGADATITEF AAWSTSEISQ NALMYYSGRL FWINGFRIIT 900
  901 AQEIGQRTSV SVSEPGKFNQ FTIIQTSLKP LPGNFSSTPT VIPDSVQESS FRIEGHTSSF 960
  961 RILWNEPPAV DWGIVFYSVE FSAHSKFLAI EQQSLPVFTV EGLEPYALFN LSVTPYTYWG1020
 1021 KGQKTSLSFR APESVPSAPE NPRIFILSLG RYTRKNEVVV EFRWNKPKHE NGVLTKSEIF1080
 1081 YHISKQSGTN KSTEDWVSVS VTPPVMSFQL EAMSPGYIVS FQVRVFTSKG PGPFSDIVMS1140
 1141 KTSEIKPCPY LISLLGNKIE FLDMDQNQVV WTFSLEGAVS TVGYTADDEM GYFAQGDALF1200
 1201 LLNLHNHSSS KLFQDVLASD IAVIAVDWIA RHLYFALKAS QDGTQIFDVD LEHKVKSPRE1260
 1261 VKICKSHTAI ISFSMYPLLS RLYWTEVSDL GYQMFYCNIS SHTLHHVLQP KASNQHGRRQ1320
 1321 CSCNVTESEL SGAMTVDTSD PDRPWIYFTK QQEIWAMDLE GCQCWKVIMV PATPGKRIIS1380
 1381 LTVDGEFIYW ITTMKDDTEI YQAKKGSGAI LSQVKAPRSK HILAYSSALQ PFPDKAYLSV1440
 1441 ASNMVEASIL NATNTSLILK LPPVKTNLTW HGITTPTSTY LVYYMEANRA NSSDRKHNML1500
 1501 ESQENVARIE GLQPFSTYVI QIAVKNYYSD PLEHLSLGKE IQGKTKSGVP GAVCHINATV1560
 1561 LSDTSLLVFW TESHKPNGPK ELVRYQLVMS YLAPIPETPL RQDEFPSARL SLLVTKLSGG1620
 1621 QQYVLKILAC HSEEMWCTES HPVSVNMFDT PEKPSALVPE NTSLLLDWKA PSNANLTRFW1680
 1681 FELQKWKYSE FYHVKASCSQ GPVYVCNIAN LQPYTPYNIR VVVVYTTGEN SSSIPESFKT1740
 1741 KAGVPSKPGI PKLLEGSKNS IQWEKAEDNG NRLMYYTLEV RKSISNDSRD QSLRWTAVFN1800
 1801 GSCSSICTWR SKNLKGTFQF RAVASNAIGF GEYSEISEDI TLVEDGFWIT ETSFILTIIV1860
 1861 GIFLVATVPL TFVWHRSLKN HKATKEGLSV LNDNDQELAE LRGLAAGVGL ANACYAVHTL1920
 1921 PTQEEIESLP AFPREKLSLR LLLGSGAFGE VYEGTAVDIL GRGSGEIKVA VKTLKKGSTD1980
 1981 QEKIEFLKEA HLMSKFNHPN ILKQLGVCLL SEPQYIILEL MEGGDLLSYL RKARGTTLSG2040
 2041 PLLTLADLVE LCVDISKGCV YLEQMHFIHR DLAARNCLVS VKDYTSPRVV KIGDFGLARE2100
 2101 IYKHDYYRKR GEGLLPVRWM APENLMDGIF TSQSDVWSFG ILVWEILTLG HQPYPAHSNL2160
 2161 DVLNYVQAGG RLEPPRNCPD DLWNLMFRCW AQEPDQRPTF YNIQDQLQLF RNVSLNNVSH2220
 2221 CGQAAPAGGV INKGFEGEDN EMATLNSDDT MPVALMETRN QEGLNYMVLA TKCSQSEDRY2280
 2281 EGPLGSKESG LHDLKKDERQ PADKDFCQQP QVAYGSPGHS EGLNYACLAH SGHGDVSE

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