YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MRP2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.88
Transmembrane Helix	29	48	0.86
Cytoplasmic	49	63	0.86
Transmembrane Helix	64	85	0.90
Non-Cytoplasmic	86	102	0.79
Transmembrane Helix	103	119	0.63
Cytoplasmic	120	128	0.56
Transmembrane Helix	129	150	0.89
Non-Cytoplasmic	151	161	0.57
Transmembrane Helix	162	184	0.89
Cytoplasmic	185	350	0.79
Transmembrane Helix	351	374	0.85
Non-Cytoplasmic	375	375	0.44
Transmembrane Helix	376	393	0.42
Cytoplasmic	394	433	0.83
Transmembrane Helix	434	452	0.87
Non-Cytoplasmic	453	458	0.78
Transmembrane Helix	459	478	0.94
Cytoplasmic	479	539	0.93
Transmembrane Helix	540	563	0.86
Non-Cytoplasmic	564	583	0.74
Transmembrane Helix	584	604	0.76
Cytoplasmic	605	968	0.98
Transmembrane Helix	969	990	0.90
Non-Cytoplasmic	991	1019	0.91
Transmembrane Helix	1020	1043	0.90
Cytoplasmic	1044	1099	0.94
Transmembrane Helix	1100	1131	0.81
Non-Cytoplasmic	1132	1541	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKFCNSTFW DLSLLESPEA DLPLCFEQTV LVWIPLGFLW LLAPWQLYSV YRSRTKRSSI  60
   61 TKFYLAKQVF VVFLLILAAI DLSLALTEDT GQATVPPVRY TNPILYLCTW LLVLAVQHSR 120
  121 QWCVRKNSWF LSLFWILSVL CGVFQFQTLI RALLKDSKSN MAYSYLFFVS YGFQIVLLIL 180
  181 TAFSGPSDST QTPSVTASFL SSITFSWYDR TVLKGYKHPL TLEDVWDIDE GFKTRSVTSK 240
  241 FEAAMTKDLQ KARQAFQRRL QKSQRKPEAT LHGLNKKQSQ SQDVLVLEEA KKKSEKTTKD 300
  301 YPKSWLIKSL FKTFHVVILK SFILKLIHDL LVFLNPQLLK LLIGFVKSSN SYVWFGYICA 360
  361 ILMFAVTLIQ SFCLQSYFQH CFVLGMCVRT TVMSSIYKKA LTLSNLARKQ YTIGETVNLM 420
  421 SVDSQKLMDA TNYMQLVWSS VIQITLSIFF LWRELGPSIL AGVGVMVLLI PVNGVLATKI 480
  481 RNIQVQNMKN KDKRLKIMNE ILSGIKILKY FAWEPSFQEQ VQGIRKKELK NLLRFGQLQS 540
  541 LLIFILQITP ILVSVVTFSV YVLVDSANVL NAEKAFTSIT LFNILRFPLS MLPMVTSSIL 600
  601 QASVSVDRLE RYLGGDDLDT SAIRRVSNFD KAVKFSEASF TWDPDLEATI QDVNLDIKPG 660
  661 QLVAVVGTVG SGKSSLVSAM LGEMENVHGH ITIQGSTAYV PQQSWIQNGT IKDNILFGSE 720
  721 YNEKKYQQVL KACALLPDLE ILPGGDMAEI GEKGINLSGG QKQRVSLARA AYQDADIYIL 780
  781 DDPLSAVDAH VGKHIFNKVV GPNGLLAGKT RIFVTHGIHF LPQVDEIVVL GKGTILEKGS 840
  841 YRDLLDKKGV FARNWKTFMK HSGPEGEATV NNDSEAEDDD DGLIPTMEEI PEDAASLAMR 900
  901 RENSLRRTLS RSSRSSSRRG KSLKNSLKIK NVNVLKEKEK EVEGQKLIKK EFVETGKVKF 960
  961 SIYLKYLQAV GWWSILFIIL FYGLNNVAFI GSNLWLSAWT SDSDNLNGTN NSSSHRDMRI1020
 1021 GVFGALGLAQ GICLLISTLW SIYACRNASK ALHGQLLTNI LRAPMRFFDT TPTGRIVNRF1080
 1081 SGDISTVDDL LPQTLRSWMM CFFGIAGTLV MICMATPVFA IIIIPLSILY ISVQVFYVAT1140
 1141 SRQLRRLDSV TKSPIYSHFS ETVTGLPIIR AFEHQQRFLA WNEKQIDINQ KCVFSWITSN1200
 1201 RWLAIRLELV GNLVVFCSAL LLVIYRKTLT GDVVGFVLSN ALNITQTLNW LVRMTSEAET1260
 1261 NIVAVERISE YINVENEAPW VTDKRPPADW PRHGEIQFNN YQVRYRPELD LVLKGITCNI1320
 1321 KSGEKVGVVG RTGAGKSSLT NCLFRILESA GGQIIIDGID VASIGLHDLR ERLTIIPQDP1380
 1381 ILFSGSLRMN LDPFNKYSDE EVWRALELAH LRSFVSGLQL GLLSEVTEGG DNLSIGQRQL1440
 1441 LCLGRAVLRK SKILVLDEAT AAVDLETDSL IQTTIRKEFS QCTVITIAHR LHTIMDSDKI1500
 1501 MVLDNGKIVE YGSPEELLSN RGSFYLMAKE AGIENVNHTE L