YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CALRL_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	145	0.98
Transmembrane Helix	146	166	0.95
Cytoplasmic	167	178	0.82
Transmembrane Helix	179	198	0.94
Non-Cytoplasmic	199	224	0.88
Transmembrane Helix	225	246	0.87
Cytoplasmic	247	253	0.82
Transmembrane Helix	254	273	0.96
Non-Cytoplasmic	274	290	0.91
Transmembrane Helix	291	313	0.92
Cytoplasmic	314	333	0.87
Transmembrane Helix	334	352	0.95
Non-Cytoplasmic	353	370	0.87
Transmembrane Helix	371	391	0.88
Cytoplasmic	392	464	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDKKCTLCF LFLLLLNMAL IAAESEEGAN QTDLGVTRNK IMTAQYECYQ KIMQDPIQQG  60
   61 EGLYCNRTWD GWLCWNDVAA GTESMQYCPD YFQDFDPSEK VTKICDQDGN WFRHPDSNRT 120
  121 WTNYTLCNNS THEKVKTALN LFYLTIIGHG LSIASLIISL IIFFYFKSLS CQRITLHKNL 180
  181 FFSFVCNSIV TIIHLTAVAN NQALVATNPV SCKVSQFIHL YLMGCNYFWM LCEGIYLHTL 240
  241 IVVAVFAEKQ HLMWYYFLGW GFPLLPACIH AIARSLYYND NCWISSDTHL LYIIHGPICA 300
  301 ALLVNLFFLL NIVRVLITKL KVTHQAESNL YMKAVRATLI LVPLLGIEFV LFPWRPEGKV 360
  361 AEEVYDYVMH ILMHYQGLLV STIFCFFNGE VQAILRRNWN QYKIQFGNGF SHSDALRSAS 420
  421 YTVSTISDVQ GYSHDCPTEH LNGKSIQDIE NVALKPEKMY DLVM