YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CGRF1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVFLVTLY EYSPLFYIAV VFTCFIATTG LVLGWLGWDV PVILRNSEET QFSTRAFKKQ  60
   61 MRQVKNPFGL EITNSSAASL ATGVTLTTDC LEDSRLTCYW GCSVQKLYEA LQKHVYCFRI 120
  121 STPQALEEAL YSDYLHREQY FIKKHSKEEI YCQLPSSTGV EDFGPVPRSR YPLVALLTLA 180
  181 DEDDREIYDI ISMVSVIHIP DKTYKLPCRI LYQYLILAQG QFYDLKQLFM SANNSATPSR 240
  241 DQSPADGSVE HSLLEKAGLA GAEVDPVEES SKDCVVCQNG GVNWVLLPCR HACLCDSCVC 300
  301 YFKQCPMCRQ FVQESFALCG QKEADKDILE TS

Type	Start	End	Confidence
Cytoplasmic	1	14	0.54
Transmembrane Helix	15	38	0.92
Non-Cytoplasmic	39	332	0.60