YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BKRB1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEVLLELQ PSNRSLQAPA NITSCESALE DWDLLYRVLP GFVITICFFG LLGNLLVLSF  60
   61 FLLPWRQWWW QQRQRQQRLT IAEIYLANLA ASDLVFVLGL PFWAENIGNR FNWPFGTDLC 120
  121 RVVSGVIKAN LFVSIFLVVA ISQDRYRLLV YPMTSWGYRR RRQAQATCLL IWVAGGLLSI 180
  181 PTFLLRSVKV VPDLNVSACI LLFPHEAWHF ARMVELNVLG FLLPVTAIIF FNYHILASLR 240
  241 GQKEASRTRC GGPKGSKTTG LILTLVASFL VCWCPYHFFA FLDFLVQVRV IQDCSWKEIT 300
  301 DLGLQLANFF AFVNSCLNPL IYVFAGRLLK TRVLGTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.96
Transmembrane Helix	42	63	0.97
Cytoplasmic	64	83	0.89
Transmembrane Helix	84	104	0.95
Non-Cytoplasmic	105	123	0.88
Transmembrane Helix	124	143	0.91
Cytoplasmic	144	163	0.91
Transmembrane Helix	164	185	0.91
Non-Cytoplasmic	186	217	0.91
Transmembrane Helix	218	237	0.96
Cytoplasmic	238	257	0.94
Transmembrane Helix	258	279	0.94
Non-Cytoplasmic	280	305	0.93
Transmembrane Helix	306	326	0.87
Cytoplasmic	327	337	0.85