YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRIO_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.50
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLGYWLLA LFVTTCTDVG LCKKRPKPGG WNTGGSRYPG QGSPGGNRYP PQSGGTWGQP  60
   61 HGGGWGQPHG GGWGQPHGGG WGQPHGGGWS QGGGTHNQWN KPSKPKTNLK HVAGAAAAGA 120
  121 VVGGLGGYML GSAMSRPMLH FGNDWEDRYY RENMYRYPNQ VYYRPVDQYS NQNNFVHDCV 180
  181 NITIKQHTVT TTTKGENFTE TDVKMMERVV EQMCVTQYQK ESQAYYDGRR SSAVLFSSPP 240
  241 VILLISFLIF LIVG

Type	Start	End	Confidence
Signal Peptide	1	22	0.47
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	110	0.63
Transmembrane Helix	111	132	0.85
Cytoplasmic	133	231	0.62
Transmembrane Helix	232	253	0.90
Non-Cytoplasmic	254	254	0.64