YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LEUK_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WAQVVSQENL PNTMTMLPFT PNSESPSTSE ALSTYSSIAT VPVTEDPKES ISPWGQTTAP  60
   61 ASSIPLGTPE LSSFFFTSAG ASGNTPVPEL TTSQEVSTEA SLVLFPKSSG VASDPPVTIT 120
  121 NPATSSAVAS TSLETFKGTS APPVTVTSST MTSGPFVATT VSSETSGPPV TMATGSLGPS 180
  181 KETHGLSATI ATSSGESSSV AGGTPVFSTK ISTTSTPNPI TTVPPRPGSS GMLLVSMLIA 240
  241 LTVVLVLVAL LLLWRQRQKR RTGALTLSRG GKRNGTVDAW AGPARVPDEE ATTASGSGGN 300
  301 KSSGAPETDG SGQRPTLTTF FSRRKSRQGS VALEELKPGT GPNLKGEEEP LVGSEDEAVE 360
  361 TPTSDGPQAK DGAAPQSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	230	0.85
Transmembrane Helix	231	254	0.92
Cytoplasmic	255	378	0.94