YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCN7_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.99
Transmembrane Helix	125	146	0.93
Non-Cytoplasmic	147	177	0.93
Transmembrane Helix	178	200	0.84
Cytoplasmic	201	223	0.86
Transmembrane Helix	224	243	0.93
Non-Cytoplasmic	244	286	0.87
Transmembrane Helix	287	310	0.87
Cytoplasmic	311	319	0.85
Transmembrane Helix	320	344	0.87
Non-Cytoplasmic	345	374	0.85
Transmembrane Helix	375	397	0.90
Cytoplasmic	398	409	0.81
Transmembrane Helix	410	431	0.91
Non-Cytoplasmic	432	485	0.88
Transmembrane Helix	486	513	0.77
Cytoplasmic	514	519	0.57
Transmembrane Helix	520	540	0.82
Non-Cytoplasmic	541	545	0.77
Transmembrane Helix	546	568	0.76
Cytoplasmic	569	574	0.65
Transmembrane Helix	575	596	0.68
Non-Cytoplasmic	597	803	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANVSKKVSW SGRDRDDEEG APLLRRTGQP DEETPLLNGA GPGARQSHSA LFRIGQMNNV  60
   61 ELDDELLDPE VDPPHTFPKE IPHNEKLLSL KYESLDYDNS ENQLFLEEER RINHTAFRTV 120
  121 EIKRWVICAL IGILTGLVAC FIDIVVENLA GLKYRVIKDN IDKFTEKGGL SFSLLLWATL 180
  181 NSAFVLVGSV IVAFIEPVAA GSGIPQIKCF LNGVKIPHVV RLKTLVIKVS GVILSVVGGL 240
  241 AVGKEGPMIH SGSVIAAGIS QGRSTSLKRD FKIFEYFRRD TEKRDFVSAG AAAGVSAAFG 300
  301 APVGGVLFSL EEGASFWNQF LTWRIFFASM ISTFTLNFVL SIYHGNMWDL SSPGLINFGR 360
  361 FDSEKMAYTI HEIPVFIAMG VVGGILGAVF NALNYWLTMF RIRYIHRPCL QVIEAMLVAA 420
  421 VTATVAFVLI YSSRDCQPLQ GSSMSYPLQL FCADGEYNSM AAAFFNTPEK SVVSLFHDPP 480
  481 GSYNPMTLGL FTLVYFFLAC WTYGLTVSAG VFIPSLLIGA AWGRLFGISM SYLTGAAIWA 540
  541 DPGKYALMGA AAQLGGIVRM TLSLTVIMME ATSNVTYGFP IMLVLMTAKI VGDVFIEGLY 600
  601 DMHIQLQSVP FLHWEAPVTS HSLTAREVMS TPVTCLRRRE KVGIIVDVLS DTASNHNGFP 660
  661 VVEDVGDTQP ARLQGLILRS QLIVLLKHKV FVERSNMGLV QRRLRLKDFR DAYPRFPPIQ 720
  721 SIHVSQDERE CTMDLSEFMN PSPYTVPQEA SLPRVFKLFR ALGLRHLVVV DNHNQVVGLV 780
  781 TRKDLARYRL GKGGLEELSL AQT