YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCN5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.93
Transmembrane Helix	55	75	0.92
Non-Cytoplasmic	76	141	0.90
Transmembrane Helix	142	163	0.85
Cytoplasmic	164	184	0.82
Transmembrane Helix	185	206	0.80
Non-Cytoplasmic	207	213	0.70
Transmembrane Helix	214	230	0.62
Cytoplasmic	231	241	0.62
Transmembrane Helix	242	265	0.86
Non-Cytoplasmic	266	314	0.73
Transmembrane Helix	315	336	0.90
Cytoplasmic	337	351	0.84
Transmembrane Helix	352	372	0.89
Non-Cytoplasmic	373	425	0.93
Transmembrane Helix	426	446	0.89
Cytoplasmic	447	453	0.73
Transmembrane Helix	454	477	0.82
Non-Cytoplasmic	478	497	0.83
Transmembrane Helix	498	519	0.73
Cytoplasmic	520	746	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLEEPIPG VGTYDDFNTI DWVREKSRDR DRHREITNKS KESTWALIHS VSDAFSGWLL  60
   61 MLLIGLLSGS LAGLIDISAH WMTDLKEGIC TGGFWFNHEH CCWNSEHVTF EDRDKCPEWN 120
  121 SWSQLIISTD QGAFAYIVNY FMYVLWALLF AFLAVSLVKA FAPYACGSGI PEIKTILSGF 180
  181 IIRGYLGKWT LVIKTITLVL AVSSGLSLGK EGPLVHVACC CGNILCHCFN KYRKNEAKRR 240
  241 EVLSAAAAAG VSVAFGAPIG GVLFSLEEVS YYFPLKTLWR SFFAALVAAF TLRSINPFGN 300
  301 SRLVLFYVEF HTPWHLFELV PFIVLGIFGG LWGALFIRTN IAWCRKRKTT QLGKYPVVEV 360
  361 LIVTAITAIL AFPNEYTRMS TSELISELFN DCGLLDSSKL CDYENHFNTS KGGELPDRPA 420
  421 GVGVYSAMWQ LALTLILKIV ITIFTFGMKI PSGLFIPSMA VGAIAGRLLG VGMEQLAYYH 480
  481 HDWGIFNSWC SQGADCITPG LYAMVGAAAC LGGVTRMTVS LVVIMFELTG GLEYIVPLMA 540
  541 AAMTSKWVAD ALGREGIYDA HIRLNGYPFL EAKEEFAHKT LAMDVMKPRR NDPLLTVLTQ 600
  601 DSMTVEDVET IISETTYSGF PVVVSRESQR LVGFVLRRDL IISIENARKK QDGVVSTSII 660
  661 YFTEHSPPMP PYTPPTLKLR NILDLSPFTV TDLTPMEIVV DIFRKLGLRQ CLVTHNGRLL 720
  721 GIITKKDVLK HIAQMANQDP ESILFN