YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCAT_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEPKPISP LKNLLAGGFG GVCLVFVGHP LDTVKVRLQT QPPSLPGQPP MYSGTIDCFR  60
   61 KTLFREGITG LYRGMAAPII GVTPMFAVCF FGFGLGKRLQ QKSPEDELTY PQLFTAGMLS 120
  121 GVFTTGIMTP GERIKCLLQI QASSGKNKYS GTLDCAKKLY QEFGIRGFYK GTALTLMRDV 180
  181 PASGMYFMTY EWLKNLFTPQ GKSVHDLSVP RVLVAGGFRG IFNWVVAIPP DVLKSRFQTA 240
  241 PPGKYPNGFR DVLRELIREE GVTSLYKGFN AVMIRAFPAN AACFLGFEIP MKILNWIAPN 300
  301 L

Type	Start	End	Confidence
Cytoplasmic	1	10	0.85
Transmembrane Helix	11	31	0.78
Non-Cytoplasmic	32	73	0.76
Transmembrane Helix	74	95	0.92
Cytoplasmic	96	109	0.70
Transmembrane Helix	110	131	0.58
Non-Cytoplasmic	132	301	0.55