YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C5AR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPISNDSSE ITYDYSDGTP NPDMPADGVY IPKMEPGDIA ALIIYLAVFL VGVTGNALVV  60
   61 WVTAFEAKRT VNAIWFLNLA VADLLSCLAL PILFTSIVKH NHWPFGDQAC IVLPSLILLN 120
  121 MYSSILLLAT ISADRFLLVF KPIWCQKFRR PGLAWMACGV TWVLALLLTI PSFVFRRIHK 180
  181 DPYSDSILCN IDYSKGPFFI EKAIAILRLM VGFVLPLLTL NICYTFLLIR TWSRKATRST 240
  241 KTLKVVMAVV TCFFVFWLPY QVTGVILAWL PRSSSTFQSV ERLNSLCVSL AYINCCVNPI 300
  301 IYVMAGQGFH GRLRRSLPSI IRNVLSEDSL GRDSKSFTRS TMDTSTQKSQ AV

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.97
Transmembrane Helix	41	64	0.92
Cytoplasmic	65	73	0.88
Transmembrane Helix	74	95	0.94
Non-Cytoplasmic	96	110	0.85
Transmembrane Helix	111	132	0.88
Cytoplasmic	133	151	0.86
Transmembrane Helix	152	174	0.92
Non-Cytoplasmic	175	203	0.97
Transmembrane Helix	204	228	0.89
Cytoplasmic	229	244	0.87
Transmembrane Helix	245	269	0.83
Non-Cytoplasmic	270	287	0.89
Transmembrane Helix	288	306	0.76
Cytoplasmic	307	352	0.76