YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TI17A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEYAREPCP WRIVDDCGGA FTMGTIGGGI FQAFKGFRNS PVGVNHRLRG SLTAIKTRAP  60
   61 QLGGSFAVWG GLFSTIDCGM VQIRGKEDPW NSITSGALTG AILAARNGPV AMVGSAAMGG 120
  121 ILLALIEGAG ILLTRFASAQ FPNGPQFAED HSQLPSSQLP SSPFGDYRQY Q

Type	Start	End	Confidence
Cytoplasmic	1	16	0.71
Transmembrane Helix	17	34	0.59
Non-Cytoplasmic	35	58	0.47
Transmembrane Helix	59	81	0.62
Cytoplasmic	82	89	0.48
Transmembrane Helix	90	105	0.41
Non-Cytoplasmic	106	109	0.41
Transmembrane Helix	110	134	0.80
Cytoplasmic	135	171	0.66