YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAT2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.98
Transmembrane Helix	41	62	0.92
Non-Cytoplasmic	63	72	0.83
Transmembrane Helix	73	95	0.89
Cytoplasmic	96	118	0.77
Transmembrane Helix	119	140	0.79
Non-Cytoplasmic	141	160	0.87
Transmembrane Helix	161	181	0.90
Cytoplasmic	182	190	0.84
Transmembrane Helix	191	211	0.90
Non-Cytoplasmic	212	231	0.88
Transmembrane Helix	232	253	0.91
Cytoplasmic	254	268	0.88
Transmembrane Helix	269	291	0.90
Non-Cytoplasmic	292	315	0.92
Transmembrane Helix	316	337	0.88
Cytoplasmic	338	362	0.81
Transmembrane Helix	363	382	0.92
Non-Cytoplasmic	383	390	0.68
Transmembrane Helix	391	410	0.93
Cytoplasmic	411	422	0.83
Transmembrane Helix	423	443	0.92
Non-Cytoplasmic	444	448	0.79
Transmembrane Helix	449	470	0.91
Cytoplasmic	471	533	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKGTRQRNN TAKNHPDRGS DTSPEAEASS GGGGVALKKE IGLVSACGII VGNIIGSGIF  60
   61 VSPKGVLENA GSVGLALIVW IVTGVITAVG ALCYAELGVT IPKSGGDYSY VKDIFGGLAG 120
  121 FLRLWIAVLV IYPTNQAVIA LTFSNYVLQP LFPTCFPPES GLRLLAAICL LLLTWVNCSS 180
  181 VRWATRVQDI FTAGKLLALA LIIIMGVVQI CKGEFFWLEP KNAFENFQEP DIGLVALAFL 240
  241 QGSFAYGGWN FLNYVTEELV DPYKNLPRAI FISIPLVTFV YVFANIAYVT AMSPQELLAS 300
  301 NAVAVTFGEK LLGVMAWIMP ISVALSTFGG VNGSLFTSSR LFFAGAREGH LPSVLAMIHV 360
  361 KRCTPIPALL FTCLSTLLML VTSDMYTLIN YVGFINYLFY GVTVAGQIVL RWKKPDIPRP 420
  421 IKISLLFPII YLLFWAFLLI FSLWSEPVVC GIGLAIMLTG VPVYFLGVYW QHKPKCFNDF 480
  481 IESLTLVSQK MCVVVYPQEG DSGTEETIDD VEEQHKPIFQ PTPVKDPDSE EQP