YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	3BHS7_RAT
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSAQVPAL VYLVTGGCGF LGEHIVRMLL EWEPRLRELR VFDLHLSSWL EELKTGPVQV  60
   61 TAIQGDVTQA HEVAAAMAGS HVVIHTAGLV DVFGKASPET IHKVNVQGTQ NVIDACVQTG 120
  121 TRLLVYTSSM EVVGPNVKGH PFYRGNEDTP YEAIHRHPYP CSKALAEQLV LEANGRKGLR 180
  181 FGGRLFRAIP ASVEHGRVYV GNVAWMHILV ARELEQRAAL MGGQVYFCYD KSPYKSYEDF 240
  241 NMEFLSPCGL RLIGTHPLLP YWLLVLLTAL NALLQWLLRP LVLYTPLLNP YTLAVANTTF 300
  301 TVSTNKAQRH FGYKPLFSWE ESRARTIHWV QAMEGSAW

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.69
Transmembrane Helix	8	30	0.61
Cytoplasmic	31	257	0.77
Transmembrane Helix	258	278	0.82
Non-Cytoplasmic	279	338	0.54